70 constexpr
dna4() noexcept = default;
71 constexpr
dna4(
dna4 const &) noexcept = default;
73 constexpr
dna4 & operator=(
dna4 const &) noexcept = default;
74 constexpr
dna4 & operator=(
dna4 &&) noexcept = default;
75 ~
dna4() noexcept = default;
81 constexpr
dna4(t const & r) noexcept
136 ret[
'U'] = ret[
'T']; ret[
'u'] = ret[
't'];
139 ret[
'R'] = ret[
'A']; ret[
'r'] = ret[
'A'];
140 ret[
'Y'] = ret[
'C']; ret[
'y'] = ret[
'C'];
141 ret[
'S'] = ret[
'C']; ret[
's'] = ret[
'C'];
142 ret[
'W'] = ret[
'A']; ret[
'w'] = ret[
'A'];
143 ret[
'K'] = ret[
'G']; ret[
'k'] = ret[
'G'];
144 ret[
'M'] = ret[
'A']; ret[
'm'] = ret[
'A'];
145 ret[
'B'] = ret[
'C']; ret[
'b'] = ret[
'C'];
146 ret[
'D'] = ret[
'A']; ret[
'd'] = ret[
'A'];
147 ret[
'H'] = ret[
'A']; ret[
'h'] = ret[
'A'];
148 ret[
'V'] = ret[
'A']; ret[
'v'] = ret[
'A'];
202 constexpr
dna4 operator""_dna4(
char const c) noexcept
222 for (
size_t i = 0; i < n; ++i)
223 r[i].assign_char(s[i]);
constexpr derived_type & assign_char(char_type const chr) noexcept
Assign from a character, implicitly converts invalid characters.
Definition: alphabet_base.hpp:211
static constexpr detail::min_viable_uint_t< size > alphabet_size
The size of the alphabet, i.e. the number of different values it can take.
Definition: alphabet_base.hpp:276
constexpr derived_type & assign_rank(rank_type const c) noexcept
Assign from a numeric value.
Definition: alphabet_base.hpp:264
rank_type rank
The value of the alphabet letter is stored as the rank.
Definition: alphabet_base.hpp:338
The four letter DNA alphabet of A,C,G,T.
Definition: dna4.hpp:53
constexpr dna4() noexcept=default
Defaulted.
static constexpr std::array< rank_type, 256 > char_to_rank_table
The lookup table used in char_to_rank.
Definition: dna4.hpp:123
friend rna4
Befriend seqan3::rna4 so it can copy char_to_rank.
Definition: dna4.hpp:64
static constexpr char_type rank_to_char(rank_type const rank)
Returns the character representation of rank.
Definition: dna4.hpp:161
friend base_t
Befriend seqan3::nucleotide_base.
Definition: dna4.hpp:59
static constexpr rank_type char_to_rank(char_type const chr)
Returns the rank representation of character.
Definition: dna4.hpp:170
static const std::array< dna4, alphabet_size > complement_table
The complement table.
Definition: dna4.hpp:155
static constexpr char_type rank_to_char_table[alphabet_size]
The lookup table used in rank_to_char.
Definition: dna4.hpp:112
A CRTP-base that refines seqan3::alphabet_base and is used by the nucleotides.
Definition: nucleotide_base.hpp:43
alphabet_base< dna4, size, char > base_t
Type of the base class.
Definition: nucleotide_base.hpp:46
The four letter RNA alphabet of A,C,G,U.
Definition: rna4.hpp:49
The main SeqAn3 namespace.
Definition: aligned_sequence_concept.hpp:29
constexpr char_type to_lower(char_type const c) noexcept
Converts 'A'-'Z' to 'a'-'z' respectively; other characters are returned as is.
Definition: transform.hpp:81
SeqAn specific customisations in the standard namespace.
Provides seqan3::nucleotide_base.